'anndata' for R [R package anndata version 0.8.0]

Robrecht Cannoodt

anndata: 'anndata' for R

A 'reticulate' wrapper for the Python package 'anndata'. Provides a scalable way of keeping track of data and learned annotations. Used to read from and write to the h5ad file format.

Version: 0.8.0

Depends: R (≥ 3.5.0)

Imports: assertthat, cli, lifecycle, Matrix, methods, R6, reticulate (≥ 1.41)

Suggests: stats, testthat, knitr, rmarkdown

Published: 2025年05月27日

DOI: 10.32614/CRAN.package.anndata

Author: Philipp Angerer ORCID iD [ccp], Alex Wolf ORCID iD [ccp], Isaac Virshup ORCID iD [ccp], Sergei Rybakov ORCID iD [ccp], Robrecht Cannoodt ORCID iD [aut, cre, cph]

Maintainer: Robrecht Cannoodt <rcannood at gmail.com>

BugReports: https://github.com/dynverse/anndata/issues

License: MIT + file LICENSE

URL: https://anndata.dynverse.org, https://github.com/dynverse/anndata

NeedsCompilation: no

Materials: README, NEWS

CRAN checks: anndata results

Documentation:

Reference manual: anndata.html , anndata.pdf

Vignettes: Getting started (source, R code)
Demo with scanpy (source, R code)

Downloads:

Package source: anndata_0.8.0.tar.gz

Windows binaries: r-devel: anndata_0.8.0.zip, r-release: anndata_0.8.0.zip, r-oldrel: anndata_0.8.0.zip

macOS binaries: r-release (arm64): anndata_0.8.0.tgz, r-oldrel (arm64): anndata_0.8.0.tgz, r-release (x86_64): anndata_0.8.0.tgz, r-oldrel (x86_64): anndata_0.8.0.tgz

Old sources: anndata archive

Reverse dependencies:

Reverse imports: BgeeDB, singleCellTK

Reverse suggests: dyngen, laminr, SCORPIUS, zellkonverter

Linking:

Please use the canonical form https://CRAN.R-project.org/package=anndata to link to this page.