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clustifyr
This is the released version of clustifyr; for the devel version, see clustifyr.
Classifier for Single-cell RNA-seq Using Cell Clusters
Bioconductor version: Release (3.22)
Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.
Author: Rui Fu [cre, aut], Kent Riemondy [aut], Austin Gillen [ctb], Chengzhe Tian [ctb], Jay Hesselberth [ctb], Yue Hao [ctb], Michelle Daya [ctb], Sidhant Puntambekar [ctb], RNA Bioscience Initiative [fnd, cph] (ROR: <https://ror.org/03wmf1y16>)
Maintainer: Rui Fu <ray.sinensis at gmail.com>
citation("clustifyr")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clustifyr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clustifyr")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.