alabaster.sfe

This is the released version of alabaster.sfe; for the devel version, see alabaster.sfe.

Language agnostic on disk serialization of SpatialFeatureExperiment

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DOI: 10.18129/B9.bioc.alabaster.sfe

Bioconductor version: Release (3.22)

Builds upon the existing ArtifactDB project, expending alabaster.spatial for language agnostic on disk serialization of SpatialFeatureExperiment.

Author: Lambda Moses [aut, cre] ORCID iD ORCID: 0000-0002-7092-9427

Maintainer: Lambda Moses <dl3764 at columbia.edu>

Citation (from within R, enter citation("alabaster.sfe")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("alabaster.sfe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.sfe")

Overview HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, Software, Spatial

Version 1.2.0

In Bioconductor since BioC 3.21 (R-4.5) (0.5 years)

License MIT + file LICENSE

Depends R (>= 4.1.0), SpatialFeatureExperiment(>= 1.9.3), alabaster.base

Imports alabaster.sce, alabaster.spatial(>= 1.5.2), EBImage, jsonlite, methods, RBioFormats, S4Vectors, sfarrow, SingleCellExperiment, spatialreg, spdep, SummarizedExperiment, terra, xml2

System Requirements

URL https://pachterlab.github.io/alabaster.sfe/

Bug Reports https://github.com/pachterlab/alabaster.sfe/issues

Suggests BiocStyle, fs, knitr, rmarkdown, scater, sf, SFEData, testthat (>= 3.0.0), Voyager(>= 1.9.1)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.sfe_1.2.0.tar.gz

Windows Binary (x86_64) alabaster.sfe_1.2.0.zip

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/alabaster.sfe

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.sfe

Bioc Package Browser https://code.bioconductor.org/browse/alabaster.sfe/

Package Short Url https://bioconductor.org/packages/alabaster.sfe/

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