alabaster.base

This is the released version of alabaster.base; for the devel version, see alabaster.base.

Save Bioconductor Objects to File

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DOI: 10.18129/B9.bioc.alabaster.base

Bioconductor version: Release (3.22)

Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.base")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("alabaster.base")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.base")

Saving and loading artifacts HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Software

Version 1.10.0

In Bioconductor since BioC 3.17 (R-4.3) (2.5 years)

License MIT + file LICENSE

Depends

Imports alabaster.schemas, methods, utils, S4Vectors, rhdf5(>= 2.47.6), jsonlite, jsonvalidate, Rcpp

System Requirements C++17, GNU make

URL https://github.com/ArtifactDB/alabaster.base

Bug Reports https://github.com/ArtifactDB/alabaster.base/issues

Suggests BiocStyle, rmarkdown, knitr, testthat, digest, Matrix, alabaster.matrix

Linking To Rcpp, assorthead(>= 1.1.2), Rhdf5lib

Enhances

Depends On Me alabaster, alabaster.bumpy, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.sfe, alabaster.spatial, alabaster.string, alabaster.vcf

Imports Me celldex, scRNAseq

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.base_1.10.0.tar.gz

Windows Binary (x86_64) alabaster.base_1.10.0.zip (64-bit only)

macOS Binary (x86_64) alabaster.base_1.10.0.tgz

macOS Binary (arm64) alabaster.base_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/alabaster.base

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.base

Bioc Package Browser https://code.bioconductor.org/browse/alabaster.base/

Package Short Url https://bioconductor.org/packages/alabaster.base/

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