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MungeSumstats
This is the released version of MungeSumstats; for the devel version, see MungeSumstats.
Standardise summary statistics from GWAS
Bioconductor version: Release (3.22)
The *MungeSumstats* package is designed to facilitate the standardisation of GWAS summary statistics. It reformats inputted summary statisitics to include SNP, CHR, BP and can look up these values if any are missing. It also pefrorms dozens of QC and filtering steps to ensure high data quality and minimise inter-study differences.
Author: Alan Murphy [aut, cre] ORCID iD ORCID: 0000-0002-2487-8753 , Brian Schilder [aut, ctb] ORCID iD ORCID: 0000-0001-5949-2191 , Nathan Skene [aut] ORCID iD ORCID: 0000-0002-6807-3180
Maintainer: Alan Murphy <alanmurph94 at hotmail.com>
citation("MungeSumstats")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MungeSumstats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MungeSumstats")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.