A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets [R package UpSetR version 1.4.0]

Nils Gehlenborg

UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.

Version: 1.4.0

Depends: R (≥ 3.0)

Imports: ggplot2, gridExtra, plyr, utils, stats, methods, grDevices, scales

Suggests: knitr

Published: 2019年05月22日

DOI: 10.32614/CRAN.package.UpSetR

Author: Jake Conway [cre], Nils Gehlenborg [aut]

Maintainer: Jake Conway <jake_conway at hms.harvard.edu>

BugReports: http://github.com/hms-dbmi/UpSetR/issues

License: MIT + file LICENSE

URL: http://github.com/hms-dbmi/UpSetR

NeedsCompilation: no

Materials: README, NEWS

CRAN checks: UpSetR results

Documentation:

Reference manual: UpSetR.html , UpSetR.pdf

Vignettes: Attribute Plots (source, R code)
Basic Usage (source, R code)
Querying the Data (source, R code)
Incorporating Set Metadata (source, R code)

Downloads:

Package source: UpSetR_1.4.0.tar.gz

Windows binaries: r-devel: UpSetR_1.4.0.zip, r-release: UpSetR_1.4.0.zip, r-oldrel: UpSetR_1.4.0.zip

macOS binaries: r-release (arm64): UpSetR_1.4.0.tgz, r-oldrel (arm64): UpSetR_1.4.0.tgz, r-release (x86_64): UpSetR_1.4.0.tgz, r-oldrel (x86_64): UpSetR_1.4.0.tgz

Old sources: UpSetR archive

Reverse dependencies:

Reverse imports: artMS, ASpli, biblioverlap, bulkAnalyseR, dar, DiscoRhythm, fastml, HiCaptuRe, iCOBRA, ideal, inDAGO, ivygapSE, LymphoSeq, MAGAR, MatrixQCvis, mpwR, MultiRNAflow, naniar, plinkQC, PolySTest, PRONE, PTXQC, RFLOMICS, rimu, seqsetvis, tidypopgen, ViSEAGO

Reverse suggests: anglemania, Cepo, ChIPpeakAnno, distinct, DuplexDiscovereR, fuseMLR, ggpicrust2, HMP2Data, HoloFoodR, immunarch, mastR, MetaNeighbor, miceFast, MultiAssayExperiment, MungeSumstats, muscat, OmicNavigator, pcutils, SingleCellMultiModal, smartid, StabMap, systemPipeShiny, TFutils

Linking:

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