HiContacts

This is the released version of HiContacts; for the devel version, see HiContacts.

Analysing cool files in R with HiContacts

Bioconductor version: Release (3.22)

HiContacts provides a collection of tools to analyse and visualize Hi-C datasets imported in R by HiCExperiment.

Author: Jacques Serizay [aut, cre] ORCID iD ORCID: 0000-0002-4295-0624

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContacts")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HiContacts")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContacts")

Introduction to HiContacts HTML R Script

Reference Manual PDF

LICENSE Text

Version 1.12.0

In Bioconductor since BioC 3.16 (R-4.2) (3 years)

License MIT + file LICENSE

Depends R (>= 4.2), HiCExperiment

System Requirements

Linking To

Enhances

Depends On Me

Imports Me OHCA

Suggests Me HiCExperiment

Links To Me

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) HiContacts_1.12.0.zip (64-bit only)

macOS Binary (x86_64) HiContacts_1.12.0.tgz

macOS Binary (arm64) HiContacts_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/HiContacts

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiContacts

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