ChAMP
This is the released version of ChAMP; for the devel version, see ChAMP.
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Bioconductor version: Release (3.22)
The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.
Author: Yuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Maintainer: Yuan Tian <champ450k at gmail.com>
citation("ChAMP")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChAMP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChAMP")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.