iSEE
This is the released version of iSEE; for the devel version, see iSEE.
Interactive SummarizedExperiment Explorer
Bioconductor version: Release (3.22)
Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.
Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Federico Marini [aut] ORCID iD ORCID: 0000-0003-3252-7758 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Aaron Lun [aut] ORCID iD ORCID: 0000-0002-3564-4813
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEE")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEE")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.