iSEEhex

This is the released version of iSEEhex; for the devel version, see iSEEhex.

iSEE extension for summarising data points in hexagonal bins

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DOI: 10.18129/B9.bioc.iSEEhex

Bioconductor version: Release (3.22)

This package provides panels summarising data points in hexagonal bins for `iSEE`. It is part of `iSEEu`, the iSEE universe of panels that extend the `iSEE` package.

Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Federico Marini [aut] ORCID iD ORCID: 0000-0003-3252-7758 , Aaron Lun [aut] ORCID iD ORCID: 0000-0002-3564-4813

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEhex")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iSEEhex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEhex")

The iSEEhex package HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.12.0

In Bioconductor since BioC 3.16 (R-4.2) (3 years)

License Artistic-2.0

Depends SummarizedExperiment, iSEE

Imports ggplot2, hexbin, methods, shiny

System Requirements

URL https://github.com/iSEE/iSEEhex

Bug Reports https://support.bioconductor.org/t/iSEEhex

Suggests BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), scRNAseq, scater

Linking To

Enhances

Depends On Me iSEEu

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEhex_1.12.0.tar.gz

Windows Binary (x86_64) iSEEhex_1.12.0.zip

macOS Binary (x86_64) iSEEhex_1.12.0.tgz

macOS Binary (arm64) iSEEhex_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iSEEhex

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEhex

Bioc Package Browser https://code.bioconductor.org/browse/iSEEhex/

Package Short Url https://bioconductor.org/packages/iSEEhex/

Package Downloads Report Download Stats