rols

This is the development version of rols; for the stable release version, see rols.

An R interface to the Ontology Lookup Service

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DOI: 10.18129/B9.bioc.rols

Bioconductor version: Development (3.23)

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Author: Laurent Gatto [aut, cre] ORCID iD ORCID: 0000-0002-1520-2268 , Tiage Chedraoui Silva [ctb], Andrew Clugston [ctb]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rols")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rols")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GO, ImmunoOncology, MassSpectrometry, Software

Version 3.7.0

In Bioconductor since BioC 2.11 (R-2.15) (13 years)

License GPL-2

Depends methods

Imports httr2, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1)

System Requirements

URL http://lgatto.github.io/rols/

Bug Reports https://github.com/lgatto/rols/issues

Suggests GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/rols

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rols

Package Short Url https://bioconductor.org/packages/rols/

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