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plyinteractions (development version)

plyinteractions

This is the development version of plyinteractions; for the stable release version, see plyinteractions.

Extending tidy verbs to genomic interactions

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DOI: 10.18129/B9.bioc.plyinteractions

Bioconductor version: Development (3.23)

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("plyinteractions")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("plyinteractions")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyinteractions")

HiCarithmetic HTML R Script

plyinteractions HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.9.0

In Bioconductor since BioC 3.18 (R-4.3) (2 years)

License Artistic-2.0

Depends R (>= 4.3.0)

Imports InteractionSet, Seqinfo, BiocGenerics, GenomicRanges, plyranges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils

System Requirements

URL https://github.com/js2264/plyinteractions

Bug Reports https://github.com/js2264/plyinteractions/issues

See More

Suggests tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, GenomeInfoDb, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me tidyomics

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plyinteractions_1.9.0.tar.gz

Windows Binary (x86_64) plyinteractions_1.9.0.zip

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/plyinteractions

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plyinteractions

Bioc Package Browser https://code.bioconductor.org/browse/plyinteractions/

Package Short Url https://bioconductor.org/packages/plyinteractions/

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