csdR

This is the development version of csdR; for the stable release version, see csdR.

Differential gene co-expression

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DOI: 10.18129/B9.bioc.csdR

Bioconductor version: Development (3.23)

This package contains functionality to run differential gene co-expression across two different conditions. The algorithm is inspired by Voigt et al. 2017 and finds Conserved, Specific and Differentiated genes (hence the name CSD). This package include efficient and variance calculation by bootstrapping and Welford's algorithm.

Author: Jakob Peder Pettersen [aut, cre] ORCID iD ORCID: 0000-0002-3485-1634

Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen at gmail.com>

Citation (from within R, enter citation("csdR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("csdR")

For older versions of R, please refer to the appropriate Bioconductor release.