ReducedExperiment

This is the development version of ReducedExperiment; for the stable release version, see ReducedExperiment.

Containers and tools for dimensionally-reduced -omics representations

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DOI: 10.18129/B9.bioc.ReducedExperiment

Bioconductor version: Development (3.23)

Provides SummarizedExperiment-like containers for storing and manipulating dimensionally-reduced assay data. The ReducedExperiment classes allow users to simultaneously manipulate their original dataset and their decomposed data, in addition to other method-specific outputs like feature loadings. Implements utilities and specialised classes for the application of stabilised independent component analysis (sICA) and weighted gene correlation network analysis (WGCNA).

Author: Jack Gisby [aut, cre] ORCID iD ORCID: 0000-0003-0511-8123 , Michael Barnes [aut] ORCID iD ORCID: 0000-0001-9097-7381

Maintainer: Jack Gisby <jackgisby at gmail.com>

Citation (from within R, enter citation("ReducedExperiment")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ReducedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.