condcomp

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see condcomp.

Condition Comparison in scRNA-seq Data

DOI: 10.18129/B9.bioc.condcomp

Bioconductor version: 3.9

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco [aut, cre]

Maintainer: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Citation (from within R, enter citation("condcomp")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("condcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("condcomp")

scRNA-seq data heterogeneity with condcomp HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, ImmunoOncology, SingleCell, Software, Visualization

Version 1.1.1

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License GPL (>=2) | file LICENSE

Depends R (>= 3.5.0)

Imports cluster, ggplot2, ggrepel, outliers

System Requirements

URL

Suggests testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package condcomp_1.1.1.tar.gz

Windows Binary condcomp_1.1.1.zip

Mac OS X 10.11 (El Capitan) condcomp_1.1.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/condcomp

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/condcomp

Bioc Package Browser https://code.bioconductor.org/browse/condcomp/

Package Short Url https://bioconductor.org/packages/condcomp/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.9 Source Archive