viper
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see viper.
Virtual Inference of Protein-activity by Enriched Regulon analysis
Bioconductor version: 3.8
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Author: Mariano J Alvarez <reef103 at gmail.com>
Maintainer: Mariano J Alvarez <reef103 at gmail.com>
Citation (from within R, enter
citation("viper")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("viper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("viper") Reference Manual
PDF
NEWS
Text
LICENSE
Text
Details
biocViews
FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version
1.16.0
In Bioconductor since
BioC 2.14 (R-3.1) (10 years)
License
file LICENSE
Depends
R (>= 2.14.0), Biobase, methods
Imports
mixtools, stats, parallel, e1071, KernSmooth
System Requirements
See More
Suggests
bcellViper
Linking To
Enhances
Depends On Me
aracne.networks, vulcan
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
viper_1.16.0.tar.gz
Windows Binary
viper_1.16.0.zip
Mac OS X 10.11 (El Capitan)
viper_1.16.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/viper
Bioc Package Browser
https://code.bioconductor.org/browse/viper/
Package Short Url
https://bioconductor.org/packages/viper/
Package Downloads Report
Download Stats
Old Source Packages for BioC 3.8
Source Archive