diggit

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see diggit.

Inference of Genetic Variants Driving Cellular Phenotypes

Bioconductor version: 3.8

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggit")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")

Using DIGGIT PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.14.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License file LICENSE

Depends R (>= 3.0.2), Biobase, methods

Imports ks, viper(>= 1.3.1), parallel

System Requirements

URL

Suggests diggitdata

Linking To

Enhances

Depends On Me

Imports Me

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Follow Installation instructions to use this package in your R session.

Source Package diggit_1.14.0.tar.gz

Windows Binary diggit_1.14.0.zip

Mac OS X 10.11 (El Capitan) diggit_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/diggit

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diggit

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Old Source Packages for BioC 3.8 Source Archive