rpx

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: 3.8

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("rpx")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

An R interface to the ProteomeXchange repository HTML R Script

Reference Manual PDF

NEWS Text

Version 1.18.1

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-2

Depends methods

Imports xml2, RCurl, utils

System Requirements

Suggests MSnbase, Biostrings, BiocStyle, testthat, knitr

Linking To

Enhances

Depends On Me proteomics

Imports Me proteoQC

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package rpx_1.18.1.tar.gz

Windows Binary rpx_1.18.1.zip

Mac OS X 10.11 (El Capitan) rpx_1.18.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/rpx

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx

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Old Source Packages for BioC 3.8 Source Archive