proteoQC

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control

DOI: 10.18129/B9.bioc.proteoQC

Bioconductor version: 3.8

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("proteoQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteoQC")

00 proteoQC introduction HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization

Version 1.18.1

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License LGPL-2

Depends R (>= 3.0.0), XML, VennDiagram, MSnbase

Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown

System Requirements

URL https://github.com/wenbostar/proteoQC

Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proteoQC_1.18.1.tar.gz

Windows Binary proteoQC_1.18.1.zip

Mac OS X 10.11 (El Capitan) proteoQC_1.18.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/proteoQC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteoQC

Bioc Package Browser https://code.bioconductor.org/browse/proteoQC/

Package Short Url https://bioconductor.org/packages/proteoQC/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive