SVM2CRM

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVM2CRM.

SVM2CRM: support vector machine for cis-regulatory elements detections

DOI: 10.18129/B9.bioc.SVM2CRM

Bioconductor version: 3.8

Detection of cis-regulatory elements using svm implemented in LiblineaR.

Author: Guidantonio Malagoli Tagliazucchi <malagoli at ingm.org>

Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Citation (from within R, enter citation("SVM2CRM")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SVM2CRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SVM2CRM")

The \Rpackage{SVM2CRM} Package PDF R Script

Reference Manual PDF

README Text

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine

Version 1.14.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License GPL-3

Depends R (>= 3.2.0), LiblineaR, SVM2CRMdata

Imports AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification

System Requirements

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SVM2CRM_1.14.0.tar.gz

Windows Binary SVM2CRM_1.14.0.zip

Mac OS X 10.11 (El Capitan) SVM2CRM_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SVM2CRM

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SVM2CRM

Bioc Package Browser https://code.bioconductor.org/browse/SVM2CRM/

Package Short Url https://bioconductor.org/packages/SVM2CRM/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.8 Source Archive