flowTrans

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowTrans.

Parameter Optimization for Flow Cytometry Data Transformation

Bioconductor version: 3.7

Profile maximum likelihood estimation of parameters for flow cytometry data transformations.

Author: Greg Finak <gfinak at fredhutch.org>, Juan Manuel-Perez <jperez at ircm.qc.ca>, Raphael Gottardo <rgottard at fredhutch.org>

Maintainer: Greg Finak <gfinak at fredhutch.org>

Citation (from within R, enter citation("flowTrans")):

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowTrans")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowTrans")

flowTrans package PDF R Script

Reference Manual PDF

Version 1.32.0

In Bioconductor since BioC 2.6 (R-2.11) (14 years)

License Artistic-2.0

Depends R (>= 2.11.0), flowCore, flowViz, flowClust

Imports flowCore, methods, flowViz, stats, flowClust

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Follow Installation instructions to use this package in your R session.

Windows Binary flowTrans_1.32.0.zip

Mac OS X 10.11 (El Capitan) flowTrans_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowTrans

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowTrans

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Old Source Packages for BioC 3.7 Source Archive