flowClust

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowClust.

Clustering for Flow Cytometry

Bioconductor version: 3.7

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo <raph at stat.ubc.ca>, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>, Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowClust")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

flowClust package PDF R Script

Reference Manual PDF

README Text

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, FlowCytometry, Software, Visualization

Version 3.18.0

In Bioconductor since BioC 2.2 (R-2.7) (16 years)

License Artistic-2.0

Depends R (>= 2.5.0)

Imports BiocGenerics, MCMCpack, methods, Biobase, graph, RBGL, ellipse, flowViz, flowCore, clue, mnormt

System Requirements GNU make

URL

Suggests testthat, flowWorkspace, flowWorkspaceData

Linking To

Enhances

Depends On Me flowMerge, flowTrans

Imports Me CONFESS, flowTrans, flowType, openCyto

Suggests Me BiocGenerics

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowClust_3.18.0.tar.gz

Windows Binary flowClust_3.18.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) flowClust_3.18.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowClust

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowClust

Package Short Url https://bioconductor.org/packages/flowClust/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.7 Source Archive