This package is for version 3.6 of Bioconductor.
This package has been removed from Bioconductor.
For the last stable, up-to-date release version, see oneChannelGUI.
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Bioconductor version: 3.6
This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis
Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)
Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>
Citation (from within R, enter citation("oneChannelGUI")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("oneChannelGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oneChannelGUI")
oneChannelGUI microarray exon-level data analysis overview
PDF
oneChannelGUI microarray gene-level data analysis overview
PDF
oneChannelGUI miRNA and RNA-seq data analysis overview
PDF
oneChannelGUI Stand Alone Functions
PDF
Details
biocViews
DataImport,
DifferentialExpression,
GUI,
Microarray,
MultipleComparison,
OneChannel,
Preprocessing,
QualityControl,
RNASeq,
Sequencing,
Software,
StatisticalMethod
Version
1.41.0
In Bioconductor since
BioC 2.0 (R-2.5) (17 years)
License
Artistic-2.0
Imports
System Requirements
See More
Suggests
annotate,
genefilter,
maSigPro, pamr,
pdmclass,
ChIPpeakAnno,
chipseq,
BSgenome,
Rgraphviz,
affy,
annaffy,
affyPLM,
multtest,
ssize,
sizepower,
RankProd,
org.Hs.eg.db,
org.Mm.eg.db,
org.Rn.eg.db,
edgeR,
metaArray,
MergeMaid,
biomaRt,
GenomeGraphs,
AffyCompatible,
rtracklayer,
Genominator,
EDASeq,
limma,
DESeq,
DEXSeq,
goseq,
hugene10sttranscriptcluster.db,
mogene10sttranscriptcluster.db,
ragene10sttranscriptcluster.db,
GOstats,
AnnotationDbi,
preprocessCore,
baySeq,
HuExExonProbesetLocation,
MoExExonProbesetLocation,
RaExExonProbesetLocation, snow,
RmiR,
RmiR.Hs.miRNA,
BSgenome.Hsapiens.UCSC.hg19, R.utils,
cummeRbund,
BSgenome.Mmusculus.UCSC.mm9,
BSgenome.Rnorvegicus.UCSC.rn4,
DESeq2,
GenomicAlignments,
BiocParallel,
KEGG.db,
miRNApath,
miRNAtap,
miRNAtap.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Windows Binary
Source Repository
git clone https://git.bioconductor.org/packages/oneChannelGUI
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/oneChannelGUI