To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scone")

In most cases, you don't need to download the package archive at all.

scone

DOI: 10.18129/B9.bioc.scone

Single Cell Overview of Normalized Expression data

Bioconductor version: Release (3.5)

SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.

Author: Michael Cole [aut, cre, cph], Davide Risso [aut, cph]

Maintainer: Michael Cole <mbeloc at gmail.com>

Citation (from within R, enter citation("scone")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scone")

Documentation

HTML R Script scone Vignette
PDF Reference Manual
Text NEWS

Details

biocViews Coverage, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License Artistic-2.0
Depends R (>= 3.4), methods, SummarizedExperiment
Imports graphics, stats, utils, aroma.light, BiocParallel, class, cluster, compositions, diptest, EDASeq, scran, edgeR, fpc, gplots, grDevices, hexbin, limma, matrixStats, mixtools, RColorBrewer, boot, shiny, miniUI, rhdf5, RUVSeq, DT, NMF, ggplot2, plotly, reshape2, visNetwork, rARPACK
LinkingTo
Suggests BiocStyle, scRNAseq, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/YosefLab/scone/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scone_1.0.0.tar.gz
Windows Binary scone_1.0.0.zip
Mac OS X 10.11 (El Capitan) scone_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scone
Package Short Url http://bioconductor.org/packages/scone/
Package Downloads Report Download Stats

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