NMF: Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.
Version:
0.28
Imports:
graphics, stats,
stringr (≥ 1.0.0),
digest, grid, grDevices,
gridBase,
colorspace,
RColorBrewer,
foreach,
doParallel,
ggplot2,
reshape2,
Biobase,
codetools,
BiocManager
Published:
2024年08月22日
Author:
Renaud Gaujoux [aut],
Cathal Seoighe [aut],
Nicolas Sauwen [cre]
Maintainer:
Nicolas Sauwen <nicolas.sauwen at openanalytics.eu>
NeedsCompilation:
yes
Documentation:
Downloads:
Reverse dependencies:
Reverse imports:
CARDspa,
clusterExperiment,
DBNMFrank,
funOmics,
hNMF,
MetabolSSMF,
miRSM,
pcaExplorer,
projectR,
SCdeconR,
scITD,
shattering,
sigminer,
SomaticSignatures,
SpNMF
Reverse suggests:
AUCell,
CimpleG,
cola,
crassmat,
diceR,
dimRed,
Evacluster,
iTOP,
looking4clusters,
maftools,
MAST,
mia,
mlr3pipelines,
scone
Linking:
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