To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RITAN")

In most cases, you don't need to download the package archive at all.

RITAN

DOI: 10.18129/B9.bioc.RITAN

Rapid Integration of Term Annotation and Network resources

Bioconductor version: Release (3.5)

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks.

Author: Michael Zimmermann

Maintainer: Michael Zimmermann <zimmermann.michael at mayo.edu>

Citation (from within R, enter citation("RITAN")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RITAN")

Documentation

HTML R Script Enrichment Vignette
HTML R Script Vignette Title
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews FunctionalGenomics, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License file LICENSE
Depends R (>= 3.4), ProNet
Imports grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, hash, png, sqldf, igraph, knitr, RITANdata
LinkingTo
Suggests rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RITAN_1.0.0.tar.gz
Windows Binary RITAN_1.0.0.zip
Mac OS X 10.11 (El Capitan) RITAN_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RITAN
Package Short Url http://bioconductor.org/packages/RITAN/
Package Downloads Report Download Stats

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