To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")

In most cases, you don't need to download the package archive at all.

seqLogo

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see seqLogo.

Sequence logos for DNA sequence alignments

Bioconductor version: 3.4

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

Citation (from within R, enter citation("seqLogo")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("seqLogo")
PDF R Script Sequence logos for DNA sequence alignments
PDF Reference Manual

Details

biocViews SequenceMatching, Software
Version 1.40.0
In Bioconductor since BioC 2.0 (R-2.5) (10 years)
License LGPL (>= 2)
Depends methods, grid
Imports stats4
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me motifRG, rGADEM
Imports Me motifRG, PWMEnrich, rGADEM, spliceSites, SPLINTER, TFBSTools
Suggests Me BCRANK, DiffLogo, MotifDb
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source seqLogo_1.40.0.tar.gz
Windows Binary seqLogo_1.40.0.zip
Mac OS X 10.9 (Mavericks) seqLogo_1.40.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/seqLogo/tree/release-3.4
Package Short Url http://bioconductor.org/packages/seqLogo/
Package Downloads Report Download Stats

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