To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")

In most cases, you don't need to download the package archive at all.

SPLINTER

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see SPLINTER.

Splice Interpreter Of Transcripts

Bioconductor version: 3.4

SPLINTER provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Author: Diana Low

Maintainer: Diana Low <dlow at imcb.a-star.edu.sg>

Citation (from within R, enter citation("SPLINTER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SPLINTER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("SPLINTER")
PDF R Script SPLINTER
PDF Reference Manual
Text NEWS

Details

biocViews AlternativeSplicing, GeneExpression, RNASeq, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License GPL-2
Depends R (>= 3.3.0), grDevices, stats
Imports graphics, ggplot2, seqLogo, Biostrings, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, BSgenome.Mmusculus.UCSC.mm9
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SPLINTER_1.0.0.tar.gz
Windows Binary SPLINTER_1.0.0.zip
Mac OS X 10.9 (Mavericks) SPLINTER_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SPLINTER/tree/release-3.4
Package Short Url http://bioconductor.org/packages/SPLINTER/
Package Downloads Report Download Stats

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