macrophage

This is the released version of macrophage; for the devel version, see macrophage.

Human macrophage immune response

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DOI: 10.18129/B9.bioc.macrophage

Bioconductor version: Release (3.22)

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("macrophage")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("macrophage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("macrophage")

Salmon quantifications for human macrophage immune response experiment HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, RNASeqData, SequencingData

Version 1.26.0

License GPL (>= 2)

Depends R (>= 3.5.0)

Imports

System Requirements

URL

Suggests knitr, markdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me DeeDeeExperiment, fishpond, GeDi, GeneTonic, mosdef, quantiseqr, tximeta, fluentGenomics

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package macrophage_1.26.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/macrophage

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/macrophage

Package Short Url https://bioconductor.org/packages/macrophage/

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