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MerfishData
This is the released version of MerfishData; for the devel version, see MerfishData.
Collection of public MERFISH datasets
Bioconductor version: Release (3.22)
MerfishData is an ExperimentHub package that serves publicly available datasets obtained with Multiplexed Error-Robust Fluorescence in situ Hybridization (MERFISH). MERFISH is a massively multiplexed single-molecule imaging technology capable of simultaneously measuring the copy number and spatial distribution of hundreds to tens of thousands of RNA species in individual cells. The scope of the package is to provide MERFISH data for benchmarking and analysis.
Author: Ludwig Geistlinger [aut, cre] ORCID iD ORCID: 0000-0002-2495-5464 , Tyrone Lee [ctb], Helena Crowell [ctb] ORCID iD ORCID: 0000-0002-4801-1767 , Daniela Corbetta [ctb], Jeffrey Moffitt [aut], Robert Gentleman [aut]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger at hms.harvard.edu>
citation("MerfishData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MerfishData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MerfishData")
Details
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Follow Installation instructions to use this package in your R session.