iCOBRA

This is the released version of iCOBRA; for the devel version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

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DOI: 10.18129/B9.bioc.iCOBRA

Bioconductor version: Release (3.22)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre] ORCID iD ORCID: 0000-0003-3833-2169

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")

iCOBRA User Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Software, Visualization

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL (>=2)

Depends R (>= 4.4.0)

Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, utils, rlang

System Requirements

URL https://github.com/csoneson/iCOBRA

Bug Reports https://github.com/csoneson/iCOBRA/issues

Suggests knitr, markdown, rmarkdown, testthat

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.38.0.tar.gz

Windows Binary (x86_64) iCOBRA_1.38.0.zip

macOS Binary (x86_64) iCOBRA_1.38.0.tgz

macOS Binary (arm64) iCOBRA_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iCOBRA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA

Bioc Package Browser https://code.bioconductor.org/browse/iCOBRA/

Package Short Url https://bioconductor.org/packages/iCOBRA/

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