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SpaceTrooper
This is the released version of SpaceTrooper; for the devel version, see SpaceTrooper.
SpaceTrooper performs Quality Control analysis of Image-Based spatial
Bioconductor version: Release (3.22)
SpaceTrooper performs Quality Control analysis using data driven GLM models of Image-Based spatial data, providing exploration plots, QC metrics computation, outlier detection. It implements a GLM strategy for the detection of low quality cells in imaging-based spatial data (Transcriptomics and Proteomics). It additionally implements several plots for the visualization of imaging based polygons through the ggplot2 package.
Author: Dario Righelli [aut, cre] ORCID iD ORCID: 0000-0003-1504-3583 , Benedetta Banzi [aut], Oriana Romano [ctb], Matteo Merchionni [ctb], Mattia Forcato [ctb], Silvio Bicciato [aut], Davide Risso [ctb]
Maintainer: Dario Righelli <dario.righelli at gmail.com>
citation("SpaceTrooper")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpaceTrooper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpaceTrooper")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.