MCbiclust

This is the released version of MCbiclust; for the devel version, see MCbiclust.

Massive correlating biclusters for gene expression data and associated methods

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DOI: 10.18129/B9.bioc.MCbiclust

Bioconductor version: Release (3.22)

Custom made algorithm and associated methods for finding, visualising and analysing biclusters in large gene expression data sets. Algorithm is based on with a supplied gene set of size n, finding the maximum strength correlation matrix containing m samples from the data set.

Author: Robert Bentham

Maintainer: Robert Bentham <robert.bentham.11 at ucl.ac.uk>

Citation (from within R, enter citation("MCbiclust")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MCbiclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MCbiclust")

Introduction to MCbiclust HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod

Version 1.34.0

In Bioconductor since BioC 3.5 (R-3.4) (8.5 years)

License GPL-2

Depends R (>= 3.4)

Imports BiocParallel, graphics, utils, stats, AnnotationDbi, GO.db, org.Hs.eg.db, GGally, ggplot2, scales, cluster, WGCNA

System Requirements

URL

Suggests gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr, pander, devtools, testthat, GSVA

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MCbiclust_1.34.0.tar.gz

Windows Binary (x86_64) MCbiclust_1.34.0.zip

macOS Binary (x86_64) MCbiclust_1.34.0.tgz

macOS Binary (arm64) MCbiclust_1.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MCbiclust

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MCbiclust

Bioc Package Browser https://code.bioconductor.org/browse/MCbiclust/

Package Short Url https://bioconductor.org/packages/MCbiclust/

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