geneLenDataBase

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see geneLenDataBase.

Lengths of mRNA transcripts for a number of genomes

Bioconductor version: 3.21

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.

Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] ORCID iD ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("geneLenDataBase")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("geneLenDataBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Genome

Version 1.44.0

License LGPL (>= 2)

Depends R (>= 2.11.0)

Imports utils, rtracklayer, GenomicFeatures, txdbmaker

System Requirements

URL https://github.com/federicomarini/geneLenDataBase

Bug Reports https://github.com/federicomarini/geneLenDataBase/issues

Suggests

Linking To

Enhances

Depends On Me goseq

Imports Me SMITE

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneLenDataBase_1.44.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/geneLenDataBase

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneLenDataBase

Package Short Url https://bioconductor.org/packages/geneLenDataBase/

Package Downloads Report Download Stats