goseq

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see goseq.

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 3.21

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] ORCID iD ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("goseq")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("goseq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

goseq User's Guide PDF R Script

Reference Manual PDF

NEWS Text

Version 1.60.0

In Bioconductor since BioC 2.6 (R-2.11) (15.5 years)

License LGPL (>= 2)

Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase(>= 1.9.2)

System Requirements

Suggests edgeR, org.Hs.eg.db

Linking To

Enhances

Depends On Me rgsepd

Imports Me Damsel, ideal, mosdef, SMITE

Suggests Me sparrow

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package goseq_1.60.0.tar.gz

Windows Binary (x86_64) goseq_1.60.0.zip (64-bit only)

macOS Binary (x86_64) goseq_1.60.0.tgz

macOS Binary (arm64) goseq_1.60.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/goseq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/goseq

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