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SingleCellMultiModal
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see SingleCellMultiModal.
Integrating Multi-modal Single Cell Experiment datasets
Bioconductor version: 3.21
SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. We provide several multi-modal datasets including scNMT, 10X Multiome, seqFISH, CITEseq, SCoPE2, and others. The scope of the package is is to provide data for benchmarking and analysis. To cite, use the 'citation' function and see
Author: Marcel Ramos [aut, cre] ORCID iD ORCID: 0000-0002-3242-0582 , Ricard Argelaguet [aut], Al Abadi [ctb], Dario Righelli [aut], Christophe Vanderaa [ctb], Kelly Eckenrode [aut], Ludwig Geistlinger [aut], Levi Waldron [aut]
Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>
citation("SingleCellMultiModal")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SingleCellMultiModal")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SingleCellMultiModal")
Details
Package Archives
Follow Installation instructions to use this package in your R session.