qckitfastq

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see qckitfastq.

FASTQ Quality Control

DOI: 10.18129/B9.bioc.qckitfastq

Bioconductor version: 3.21

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")

Quality control analysis and visualization using qckitfastq PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews QualityControl, Sequencing, Software

Version 1.24.0

In Bioconductor since BioC 3.9 (R-3.6) (6.5 years)

License Artistic-2.0

Depends

Imports magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn

System Requirements GNU make

URL

Suggests knitr, rmarkdown, kableExtra, testthat

Linking To Rcpp, RSeqAn

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qckitfastq_1.24.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) qckitfastq_1.24.0.tgz

macOS Binary (arm64) qckitfastq_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/qckitfastq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qckitfastq

Bioc Package Browser https://code.bioconductor.org/browse/qckitfastq/

Package Short Url https://bioconductor.org/packages/qckitfastq/

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