graphite

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("graphite")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

Details

See More

Suggests checkmate, a4Preproc, ALL, BiocStyle, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db, parallel, R.rsp, RCy3, rmarkdown, SPIA(>= 2.2), testthat, topologyGSA (>= 1.4.0)

Linking To

Enhances

Depends On Me

Imports Me CBNplot, dce, EnrichmentBrowser, MIRit, mogsa, MOSClip, multiGSEA, ReactomePA, sSNAPPY, ICDS, netgsa

Suggests Me clipper, InterCellar, metaboliteIDmapping

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.