gpuMagic

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gpuMagic.

An openCL compiler with the capacity to compile R functions and run the code on GPU

DOI: 10.18129/B9.bioc.gpuMagic

Bioconductor version: 3.21

The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.

Author: Jiefei Wang [aut, cre], Martin Morgan [aut]

Maintainer: Jiefei Wang <szwjf08 at gmail.com>

Citation (from within R, enter citation("gpuMagic")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gpuMagic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gpuMagic")

Customized_opencl_code HTML R Script

quickStart HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.23.0

In Bioconductor since BioC 3.9 (R-3.6) (6.5 years)

License GPL-3

Depends R (>= 3.6.0), methods, utils

Imports Deriv, DescTools, digest, pryr, stringr, BiocGenerics

System Requirements 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make

URL

Bug Reports https://github.com/Jiefei-Wang/gpuMagic/issues

Suggests testthat, knitr, rmarkdown, BiocStyle

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

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