artMS
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see artMS.
Analytical R tools for Mass Spectrometry
Bioconductor version: 3.21
artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check [http://artms.org](http://artms.org) for details.
Author: David Jimenez-Morales [aut, cre] ORCID iD ORCID: 0000-0003-4356-6461 , Alexandre Rosa Campos [aut, ctb] ORCID iD ORCID: 0000-0003-3988-7764 , John Von Dollen [aut], Nevan Krogan [aut] ORCID iD ORCID: 0000-0003-4902-337X , Danielle Swaney [aut, ctb] ORCID iD ORCID: 0000-0001-6119-6084
Maintainer: David Jimenez-Morales <biodavidjm at gmail.com>
citation("artMS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("artMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("artMS")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.