MetaNeighbor

This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see MetaNeighbor.

Single cell replicability analysis

Bioconductor version: 3.21

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Stephan Fischer <fischer at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")

MetaNeighbor user guide PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.28.0

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License MIT + file LICENSE

Depends R (>= 3.5)

Imports grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment(>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2

System Requirements

URL

Suggests knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) MetaNeighbor_1.28.0.zip

macOS Binary (x86_64) MetaNeighbor_1.28.0.tgz

macOS Binary (arm64) MetaNeighbor_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MetaNeighbor

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaNeighbor

Package Downloads Report Download Stats