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Macarron
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see Macarron.
Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets
Bioconductor version: 3.21
Macarron is a workflow for the prioritization of potentially bioactive metabolites from metabolomics experiments. Prioritization integrates strengths of evidences of bioactivity such as covariation with a known metabolite, abundance relative to a known metabolite and association with an environmental or phenotypic indicator of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic spectral features which co-vary in abundance in a condition, transfer of functional annotations, estimation of relative abundance and differential abundance analysis to identify associations between features and phenotype/condition.
Author: Amrisha Bhosle [aut], Ludwig Geistlinger [aut], Sagun Maharjan [aut, cre]
Maintainer: Sagun Maharjan <sagunmaharjann at gmail.com>
citation("Macarron")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Macarron")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Macarron")
Details
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Follow Installation instructions to use this package in your R session.