dyebiasexamples

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see dyebiasexamples.

Example data for the dyebias package, which implements the GASSCO method.

Bioconductor version: 3.20

Data for the dyebias package, consisting of 4 self-self hybrizations of self-spotted yeast slides, as well as data from Array Express accession E-MTAB-32

Author: Philip Lijnzaad and Thanasis Margaritis

Maintainer: Philip Lijnzaad <plijnzaad at gmail.com>

Citation (from within R, enter citation("dyebiasexamples")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("dyebiasexamples")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ArrayExpress, CGHData, ExperimentData, MicroarrayData, SAGEData, TwoChannelData

Version 1.46.0

License GPL-3

Depends R (>= 1.4.1), marray, GEOquery

Imports

System Requirements

URL http://www.holstegelab.nl/publications/margaritis_lijnzaad

Suggests dyebias, convert, Biobase

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me dyebias

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dyebiasexamples_1.46.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/dyebiasexamples

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dyebiasexamples

Package Short Url https://bioconductor.org/packages/dyebiasexamples/

Package Downloads Report Download Stats