rols

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see rols.

An R interface to the Ontology Lookup Service

Bioconductor version: 3.20

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Author: Laurent Gatto [aut, cre] ORCID iD ORCID: 0000-0002-1520-2268 , Tiage Chedraoui Silva [ctb], Andrew Clugston [ctb]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rols")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rols")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rols")

An R interface to the Ontology Lookup Service HTML R Script

Reference Manual PDF

Version 3.2.0

In Bioconductor since BioC 2.11 (R-2.15) (12.5 years)

License GPL-2

Depends methods

Imports httr2, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1)

System Requirements

Suggests GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me OmicsMLRepoR, struct

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package rols_3.2.0.tar.gz

Windows Binary (x86_64) rols_3.2.0.zip

macOS Binary (x86_64) rols_3.2.0.tgz

macOS Binary (arm64) rols_3.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/rols

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rols

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