qcmetrics

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: 3.20

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

Index file for the qcmetrics package vignette HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization

Version 1.44.0

In Bioconductor since BioC 2.13 (R-3.0) (11.5 years)

License GPL-2

Depends R (>= 3.3)

Imports Biobase, methods, knitr, tools, xtable, pander, S4Vectors

System Requirements

URL http://lgatto.github.io/qcmetrics/articles/qcmetrics.html

Bug Reports https://github.com/lgatto/qcmetrics/issues

Suggests affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown

Linking To

Enhances

Depends On Me

Imports Me MSstatsQC

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.44.0.tar.gz

Windows Binary (x86_64) qcmetrics_1.44.0.zip (64-bit only)

macOS Binary (x86_64) qcmetrics_1.44.0.tgz

macOS Binary (arm64) qcmetrics_1.44.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/qcmetrics

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics

Bioc Package Browser https://code.bioconductor.org/browse/qcmetrics/

Package Short Url https://bioconductor.org/packages/qcmetrics/

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