genoCN

This package is for version 3.20 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genoCN.

genotyping and copy number study tools

DOI: 10.18129/B9.bioc.genoCN

Bioconductor version: 3.20

Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations

Author: Wei Sun and ZhengZheng Tang

Maintainer: Wei Sun <wsun at bios.unc.edu>

Citation (from within R, enter citation("genoCN")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("genoCN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genoCN")

add stuff PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Genetics, Microarray, Software

Version 1.58.0

In Bioconductor since BioC 2.6 (R-2.11) (15 years)

License GPL (>=2)

Depends

Imports graphics, stats, utils

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genoCN_1.58.0.tar.gz

Windows Binary (x86_64) genoCN_1.58.0.zip

macOS Binary (x86_64) genoCN_1.58.0.tgz

macOS Binary (arm64) genoCN_1.58.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/genoCN

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genoCN

Bioc Package Browser https://code.bioconductor.org/browse/genoCN/

Package Short Url https://bioconductor.org/packages/genoCN/

Package Downloads Report Download Stats