copa

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see copa.

Functions to perform cancer outlier profile analysis.

Bioconductor version: 3.20

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("copa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

copa Overview PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization

Version 1.74.0

In Bioconductor since BioC 1.8 (R-2.3) (19 years)

License Artistic-2.0

Depends Biobase, methods

Imports

System Requirements

URL

Suggests colonCA

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package copa_1.74.0.tar.gz

Windows Binary (x86_64) copa_1.74.0.zip

macOS Binary (x86_64) copa_1.74.0.tgz

macOS Binary (arm64) copa_1.74.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/copa

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/copa

Bioc Package Browser https://code.bioconductor.org/browse/copa/

Package Short Url https://bioconductor.org/packages/copa/

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