arrayMvout

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see arrayMvout.

multivariate outlier detection for expression array QA

Bioconductor version: 3.20

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("arrayMvout")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("arrayMvout")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayMvout")

arrayMvout -- multivariate outlier algorithm for expression arrays PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Microarray, QualityControl, Software

Version 1.64.0

In Bioconductor since BioC 2.3 (R-2.8) (16.5 years)

License Artistic-2.0

Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy

Imports mdqc, affyContam, lumi

System Requirements

URL

Suggests MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayMvout_1.64.0.tar.gz

Windows Binary (x86_64) arrayMvout_1.64.0.zip

macOS Binary (x86_64) arrayMvout_1.64.0.tgz

macOS Binary (arm64) arrayMvout_1.64.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/arrayMvout

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/arrayMvout

Bioc Package Browser https://code.bioconductor.org/browse/arrayMvout/

Package Short Url https://bioconductor.org/packages/arrayMvout/

Package Downloads Report Download Stats