alabaster.matrix

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see alabaster.matrix.

Load and Save Artifacts from File

Bioconductor version: 3.20

Save matrices, arrays and similar objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.matrix")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("alabaster.matrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.matrix")

Saving and loading arrays HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Software

Version 1.6.1

In Bioconductor since BioC 3.17 (R-4.3) (2 years)

License MIT + file LICENSE

Depends alabaster.base

Imports methods, BiocGenerics, S4Vectors, DelayedArray(>= 0.31.8), S4Arrays, SparseArray(>= 1.5.22), rhdf5(>= 2.47.1), HDF5Array, Matrix, Rcpp

System Requirements

URL

Suggests testthat, knitr, BiocStyle, chihaya, BiocSingular, ResidualMatrix

Linking To Rcpp

Enhances

Depends On Me

Imports Me alabaster, alabaster.se, celldex, scMultiome, scRNAseq

Suggests Me alabaster.base

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alabaster.matrix_1.6.1.tar.gz

Windows Binary (x86_64) alabaster.matrix_1.6.1.zip (64-bit only)

macOS Binary (x86_64) alabaster.matrix_1.6.1.tgz

macOS Binary (arm64) alabaster.matrix_1.6.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/alabaster.matrix

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alabaster.matrix

Bioc Package Browser https://code.bioconductor.org/browse/alabaster.matrix/

Package Short Url https://bioconductor.org/packages/alabaster.matrix/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.20 Source Archive