Xeva

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see Xeva.

Analysis of patient-derived xenograft (PDX) data

Bioconductor version: 3.20

The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.

Author: Arvind Mer [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("Xeva")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Xeva")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Xeva")

The Xeva User's Guide PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software

Version 1.22.1

In Bioconductor since BioC 3.9 (R-3.6) (6 years)

License GPL-3

Depends R (>= 3.6)

Imports methods, stats, utils, BBmisc, Biobase, grDevices, ggplot2, scales, ComplexHeatmap, parallel, doParallel, Rmisc, grid, nlme, PharmacoGx, downloader

System Requirements

URL

Bug Reports https://github.com/bhklab/Xeva/issues

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Xeva_1.22.1.tar.gz

Windows Binary (x86_64) Xeva_1.22.1.zip (64-bit only)

macOS Binary (x86_64) Xeva_1.22.1.tgz

macOS Binary (arm64) Xeva_1.22.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/Xeva

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Xeva

Bioc Package Browser https://code.bioconductor.org/browse/Xeva/

Package Short Url https://bioconductor.org/packages/Xeva/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.20 Source Archive